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# Data release of 180 swedish Arabidopsis thaliana accessions.
# date: 2011_04_24
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Data analysis description:

The genomes have been analyzed separately and in a joint approach.

First, each of the genomes was analyzed separately using the short 
read pipeline BWA and SAMTools and local alignment tool GATK. 
Later, the SNPs are refined by population sharing.

In this folder there are 180 different subfolders, one for 
each analyzed strain. Within each of these folders the output 
of the SNP calling of each of the strains resides:

|-- <strain_name>/
    |-- TAIR9/
        | -- <accession_name>.<accession_id>.0cf.snp




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# Strain folders: File content description.
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The SNPs are in Samtools Pileup format. For specific information about 
this file format please refer to: 

	http://samtools.sourceforge.net/pileup.shtml


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GMI, Vienna, 2011
Questions?
Quan Long <quan.long@gmi.oeaw.ac.at>