1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
Home      Collaborators      Accessions      Tools      Downloads      About      Help desk     

News

June 04, 2009
The Weigel lab released new software for short read mapping.
See download section for the latest version: downloads.
May 27, 2009
Detlef Weigel and Richard Mott The 1001 Genomes Project for Arabidopsis thaliana. Genome Biology 2009, 10:107. Published: 27 May 2009

The electronic version can be found online here.
May 26, 2009
PE sequencing of 80 accessions finished.
March 19, 2009
New software release from the Weigel Lab. See download section for the lastest SHORE version.
December 5, 2008
PE sequencing of 40 accessions finished.
September 30, 2008
Production sequencing of the first 80 strains started today.
September 25, 2008
The Weigel laboratory has just published the first two genomes sequenced with short reads. They have identified SNPs as well as short indels of 1-3 bp by mapping to the reference genome, as well as larger indels using a novel targeted assembly approach.

Ossowski, S., Schneeberger, K., Clark, R. M., Lanz, C., and Weigel, D. (2008) Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res.,published online.
September 17, 2008
823,325 SNPs and 79,961 indels for Bur-0 and Tsu-1 now available on TAIR's GBrowse and FTP site.

Welcome to the 1001 Genomes Project

The 1001 Genomes Vision

The 1001 Genomes Project has a simple goal: to discover the whole-genome sequence variation in 1001 strains (accessions) of the reference plant Arabidopsis thaliana. The resulting information will pave the way for a new era of genetics that combines large-scale association studies in wild strains with forward genetic analyses in experimental crosses, in order to identify alleles underpinning phenotypic diversity across the entire genome and the entire species. The analyses enabled by this project will have broad implications for areas as diverse as evolutionary sciences, plant breeding and human genetics.

This 1001 Genomes Project is particularly timely because the current technological revolution in sequencing means that it is now feasible to resequence large numbers of genomes. Indeed, a 1000 Genomes project for humans has just been launched. There are, however, several important differences between the two projects. The most important one is that each of the accessions in the Arabidopsis 1001 Genomes project is an inbred line with seeds that will be freely available from the stock centre to all our colleagues. Unlimited numbers of plants with identical genotype can be grown and phenotyped for each accession, in as many environments as desired, and so the sequence information we collect can be used directly in association studies at biochemical, metabolic, physiological, morphological, and whole plant-fitness levels.

Read more ...