SHORE

SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a Illumina Genome Analyzer. It is designed for projects whose analysis strategy involves mapping of reads to a reference sequence. This reference sequence does not necessarily have to be from the same species, since weighted and gapped alignments allow for accuracy even in diverged regions.

Download SHORE

SHORE is now hosted on sourceforge. We provide source code and precompiled binaries. Find SHORE here:

http://sourceforge.net/projects/shore/files


Read the manual here:

http://sourceforge.net/apps/mediawiki/shore/

Contact

If you have any questions, don't hesitate to contact us: or .

SHOREmap

If you're looking for SHOREmap, please visit the SHOREmap project site.